Zhang Q., Zmasek C.M., and Godzik A. (2010).
Domain architecture evolution of pattern-recognition receptors
Immunogenetics.
[PubMed]
[PDF]
Han M.V. and Zmasek C.M. (2009).
phyloXML: XML for evolutionary biology and comparative genomics
BMC Bioinformatics, 10:356.
[PubMed]
[PDF]
Jegla T.J., Zmasek C.M., Batalov S., and Nayak S.K. (2009).
Evolution of the human ion channel set
Combinatorial Chemistry & High Throughput Screening, 12, 2-23.
[PubMed]
[PDF]
[Google Scholar]
Zhang Q., Zmasek C.M., Dishaw L.J., Mueller M.G., Ye Y., Litman G.W., and Godzik A. (2008).
Novel genes dramatically alter regulatory network topology in amphioxus
Genome Biology, 9:R123.
[F1000]
[PubMed]
[PDF]
[Google Scholar]
Holland L.Z., Albalat R., Azumi K., ..., Zmasek C.M., ..., and Holland P.W. (2008).
The amphioxus genome illuminates vertebrate origins and cephalochordate biology
Genome Research, 18, 1100-1111.
[PubMed]
[PDF]
[Google Scholar]
Zmasek C.M. (2008).
Emerging data standards for phylogenomics research
Proceedings of TDWG 2008.
Zmasek C.M., Zhang Q., Ye Y., and Godzik A. (2007).
Surprising complexity of the ancestral apoptosis network
Genome Biology, 8:R226.
[F1000]
[PubMed]
[PDF]
[Google Scholar]
Lapp H., Bala S., ..., Zmasek C.M., ..., and Vision T.J. (2007).
The 2006 NESCent phyloinformatics hackathon: A field report
Evolutionary Bioinformatics, 2007:3 287-296.
[PDF]
Leebens-Mack J., Vision T., ..., and Zmasek C. (2006).
Taking the first steps towards a standard for reporting on phylogenies: Minimum information about a phylogenetic analysis
OMICS, 10:231-237.
[PubMed]
[PDF]
[Google Scholar]
Lawrence C.J., Zmasek C.M., Kelly Dawe R., and Malmberg R.L. (2004).
LumberJack: a heuristic tool for sequence alignment exploration and phylogenetic inference
Bioinformatics, 20, 1977-1979.
[PubMed]
[PDF]
[software download]
[Google Scholar]
Zmasek C.M. and Eddy S.R. (2002).
RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs
BMC Bioinformatics, 3:14.
[PubMed]
[PDF]
[webserver]
[software download]
[Google Scholar]
Zmasek C.M. and Eddy S.R. (2001).
A simple algorithm to infer gene duplication and speciation events on a gene tree
Bioinformatics, 17, 821-828.
[F1000]
[PubMed]
[PDF]
[software download]
[Google Scholar]
Zmasek C.M. and Eddy S.R. (2001).
ATV: Display and manipulation of annotated phylogenetic trees
Bioinformatics, 17, 383-384.
[PubMed]
[PDF]
[software download]
[Google Scholar]
Hurov J.B., Stappenbeck T.S., Zmasek C.M., White L.S., Ranganath S.H., Russell J.H., Chan A.C., Murphy K.M., and Piwnica-Worms H. (2001).
Immune system dysfunction and autoimmune disease in mice lacking Emk (Par-1) protein kinase
Molecular and Cellular Biology, 21, 3206-3219.
[PubMed]
[PDF]
[Google Scholar]
Springer C., Krappmann S., Künzler M., Zmasek C., and Braus G.H. (1997).
Activation of the HIS7 gene by the global transcription factor Abf1p
Molecular and General Genetics, 256, 136-146.
[PubMed]
[PDF]
[Google Scholar]
Last updated 2010.03.02
monochrome-effect.net | www.phylosoft.org | www.phyloxml.org |